rs47954771 SNP Detail

Summary

• ID
  rs47954771
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:38604065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCCAGTG GAAAGTTGAC
  TCACAGAAAA GACAACATGG ACAATACTCT GGGAGACTTG GGGTTCCGAT GGTATTTGGG
  GTAGGTGTGG ATATGAGGTA TGATGTCCAC TTAAAACTGA GTGATTAAAT CAAATCATGT
  CTCCTGGTGC TTAGCAGAAT TCATCAAAGG AGGCATAAAA GGTGAGACAT GTATATGTCA
  S
  CAGATGAGTT CTCTGTGGGG CAGGCGAGGC GCCCCTTCCT ATTACTGTGA GAGCTAAGTC
  CTAAGAGGCA GAACATGTTA CTAATCCAAT GTTCTTTAAC GTACATCTAT AGGCAGACTA
  ATCAGCATTA AAGCTTTACA TAAAATATGG ATCTGGACAC CCCCCCCCAC CCCGCCCAGC
  CACGCATTTA ACATTCTCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60446807	NES16430262	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47954771					SNP	G	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60446807	NES16430262	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38604065 () rs orientation: forward

Symbol	Name	Function Class
Rr515900	regulatory region 515900	1918 bp distal
Tssr138414	transcription start site region 138414	515 bp upstream
Tssr141114	transcription start site region 141114	178 bp upstream
Tssr141115	transcription start site region 141115	90 bp upstream
Tssr141116	transcription start site region 141116	17 bp downstream
Tssr141117	transcription start site region 141117	157 bp downstream
Tssr141118	transcription start site region 141118	559 bp downstream
Upk1b	uroplakin 1B	within coordinates