rs47955099 SNP Detail

Summary

• ID
  rs47955099
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30260165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATCCACCA TGCCTCTGCT TCCCAAGTGC TGTGGTTTCA
  GACATAAGCC ACCAAAATCA TGAAATATTT ATTTATTTAT TTTTGAGACA GGGTTTCTCT
  K
  TGTAGCCCTG GCTGTCCTGG AACTCACTTT GTAGACCAGG CTGGCCTCGA ACTCAGAAAT
  CTGCCTGCCT CTGCCTCCCA AGTGCTGGGA TAAAAGACG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148682544	ENSMUSSNP5836904	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47955099					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30260165 () rs orientation: forward

Symbol	Name	Function Class
Lin37	lin-37 DREAM MuvB core complex component	902 bp upstream
Psenen	presenilin enhancer gamma secretase subunit	1125 bp downstream
Rr400243	regulatory region 400243	844 bp downstream
Tssr71791	transcription start site region 71791	1993 bp upstream
Tssr71792	transcription start site region 71792	1955 bp upstream
Tssr71793	transcription start site region 71793	1209 bp upstream
Tssr71794	transcription start site region 71794	1088 bp upstream
Tssr71795	transcription start site region 71795	898 bp upstream