rs47957180 SNP Detail

Summary

• ID
  rs47957180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98178751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGCCCTC TCCAAGCTCA
  GAGCCACCCA ACAGCTGCCA CTGAGGAGAG AGAGCGAGGT CCTGGGAGGA CAAAGAGAGT
  CTCCGCAGCC GCCACAGCTG CCGCCGGAAC TCTGGGCAAA TCCCAGTGGA CAGAGTCCAG
  TTCTCCCACT CCGGATTCCG GAGAGTTGCT GCAGACAATG AGGCCCGCAG CGACAGCTCT
  Y
  GGGACAAGTT CCTCGCCTCC CGCTGAGTCT CCGGCGCCCA CCCGGGAGCA GAAAGGCTGG
  CGTCTAGCTG CGGTGGTGAG CTGCGGGACA GGCACCCGCG GACCCCACGA TCGCCGCGGG
  AACTCAGCCG AGTCCTCCTC TTCCGCCTCT CTTCCTCGGA CCGCCCAACT CCTCGCGGCA
  CTTTATAACT TTCTTCCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61199544	NES16709299	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs47957180					SNP	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61199544	NES16709299	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98178751 () rs orientation: forward

Symbol	Name	Function Class
Antxr2	anthrax toxin receptor 2	within coordinates
Cpgi16083	CpG island 16083	within coordinates
Gm42759	predicted gene 42759	within coordinates
Rr615103	regulatory region 615103	60 bp proximal
Tssr1554	transcription start site region 1554	60 bp downstream
Tssr47433	transcription start site region 47433	168 bp downstream
Tssr47434	transcription start site region 47434	156 bp downstream
Tssr47435	transcription start site region 47435	203 bp upstream
Tssr47436	transcription start site region 47436	372 bp upstream
Tssr47437	transcription start site region 47437	407 bp upstream
Tssr51988	transcription start site region 51988	276 bp upstream
Tssr51989	transcription start site region 51989	265 bp upstream
Tssr51990	transcription start site region 51990	245 bp upstream
Tssr51991	transcription start site region 51991	127 bp upstream
Tssr51992	transcription start site region 51992	72 bp upstream
Tssr51993	transcription start site region 51993	78 bp downstream
Tssr51994	transcription start site region 51994	102 bp downstream
Tssr51995	transcription start site region 51995	245 bp downstream
Tssr51996	transcription start site region 51996	405 bp downstream
Tssr51997	transcription start site region 51997	443 bp downstream
Tssr51998	transcription start site region 51998	483 bp downstream
Tssr51999	transcription start site region 51999	518 bp downstream
Tssr52000	transcription start site region 52000	539 bp downstream
Tssr52001	transcription start site region 52001	559 bp downstream
Tssr52002	transcription start site region 52002	579 bp downstream
Tssr52003	transcription start site region 52003	621 bp downstream