rs47957494 SNP Detail

Summary

• ID
  rs47957494
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52655685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTCTAAG TTAACCCATG
  GATAAACTCA TTTCCCCCCT TCTGTCTTGT TTCAAAGGAT AGGTGACCCT TGTGTATGAA
  ATATGTGTGG GTGTAAAGCT TCATTGTCTG GGATCCAATA TCTAAGCCGA GGTCTATGGC
  AGCTGTTTTA CAACTATGTA AGTGTAGGTA AATGACAGCA GGGCAAAGTA GTCTCTGTTA
  Y
  AGACTACAGG CACTGCCTGG CCTTCAGGGG ACCTCTCTGT AAGAAGCCAG TTTTGCTTCC
  TTTTGCACCT TCATCTCAAC ATTCCTTTAT TCTACATAAT TTTAAAAGTT CTCCTTTGAA
  TTGGCTGTAG CATATGTTTT TATTGTTTTC TACATTACCT AAAATCTCTG ATACACGATA
  CACGTTTCTC TTTTTAATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137738453	ENSMUSSNP1291554	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47957494					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52655685 () rs orientation: forward

Symbol	Name	Function Class
Gm35239	predicted gene, 35239	within coordinates
Tssr113445	transcription start site region 113445	1259 bp downstream