rs47957534 SNP Detail

Summary

• ID
  rs47957534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125994733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGCGGTGG TATCTTGGAT GTTTAAAAAA AAGGGGGGGG
  GGGGCGAGAG GGATATTGTA CCTCATCAAA TTATACGATC AGTTCTTAGT ACTTCACAAG
  Y
  AAATATTGAA AACAGTCTTA TCTGGTCCTG AATTTGTCCA CAATTCAAAA TAGGAGAAAT
  TTAAAGAATA TTCCCTTGGG AGGCAAATCA GCTTAGTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147495631	ENSMUSSNP3922660	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47957534					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125994733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12205	CpG island 12205	214 bp distal
Dtwd1	DTW domain containing 1	within coordinates
Fam227b	family with sequence similarity 227, member B	809 bp upstream
Rr367293	regulatory region 367293	727 bp downstream
Rr564315	regulatory region 564315	820 bp distal
Rr564316	regulatory region 564316	662 bp distal
Rr564317	regulatory region 564317	666 bp distal
Rr564318	regulatory region 564318	within coordinates
Tssr19931	transcription start site region 19931	667 bp downstream
Tssr19932	transcription start site region 19932	601 bp downstream
Tssr26028	transcription start site region 26028	852 bp upstream
Tssr26029	transcription start site region 26029	804 bp upstream
Tssr26030	transcription start site region 26030	771 bp upstream