rs47958058 SNP Detail

Summary

• ID
  rs47958058
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:41375295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGCTCCTT ATGGGTTAAC
  TCCCAAGTCT TCCTTTCATA ATTTCTCTCC CAAATAATTA ATGTAGTAAA TTATTCTTTA
  ACAGTGTGTA TGTTTCTGTA GAGCAGTTGT TTTACTGGTC TTTAATACTA ATTGCTTAAT
  TTTGGTTACA CATATTTTTC ATTTCTCCTA GGTATAAATA TGTTGATAAA ATTTCATATC
  S
  TGACTTTCCG CTAAAGTTCC TTAGATAAGA GTTTATGTTA AATTCTCATT TGTTATTTGT
  ATTGCCTGCA CTTAAAATAG TGAACAAAAT ACTTGTGAAA GTAGTGGATG TCTTTATCCA
  ATCTGTATTT ACTGACATTA CTTTTCCATT ATTCGTGATA TTGTATCCTC GTATATATGA
  AAGTAATCTT GTTTTAGTAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss52384925	NES15380830	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs47958058					SNP	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52384925	NES15380830	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:41375295 () rs orientation: forward

Symbol	Name	Function Class
Gm47376	predicted gene, 47376	within coordinates
Immp2l	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	within coordinates
Rr387110	regulatory region 387110	within coordinates