rs47958092 SNP Detail

Summary

• ID
  rs47958092
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129914891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAACCAC ATGGTGGCTC
  ACAACCACCT GTGTACTCCT CATATACATA AAATAAAAAT TTTTAAAGAT TTATTTTATA
  CATAAGTACA CTGTAGCTGT CTTCAGACAC CCCAGAAGAG GGCATCTGAC CTCATTACAG
  ATGGTTGTGA GCCACCATGT GATTGCCAGG ACTTGAACTC AGGACCTTCC AAAGAACAGT
  Y
  AGTGCTCTTA CCTGCTGAGC CATCTCGCCA GCCCATAAAA TAAACTAAGA AAAAAAAAAT
  CTTAAAAAAA AAAAAAAAAG TGGGGGCCGG GTTAGGTGCC GTGGGCAAGG TCTGGTAGCC
  CATACCTTTA ATCCCAGTCC TTGGGAGGCA GAGGCGGGCA GCCTCTTTGG AGTTCAAGGC
  CAGCCAGGGC CATAGTGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144477313	ENSMUSSNP5263333	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321692400	CHEV_5_130361921	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47958092					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129914891 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	within coordinates
Cpgi16684	CpG island 16684	917 bp proximal
Rr399383	regulatory region 399383	1158 bp upstream
Rr621372	regulatory region 621372	155 bp proximal
Rr621373	regulatory region 621373	1410 bp proximal
Tssr53498	transcription start site region 53498	1089 bp downstream
Tssr53499	transcription start site region 53499	1238 bp downstream
Tssr53500	transcription start site region 53500	1366 bp downstream
Tssr53501	transcription start site region 53501	1392 bp downstream