rs47958123 SNP Detail

Summary

• ID
  rs47958123
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116206175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCTTAGT CGGATGTATT
  TATAATTACA TAATTATGAT CAGTCCATTC ATTAAGACAG AAACACGGGT TCATTTTCAC
  AAAGTCTAAT GGTACATGGT ATTTCAGATA GGATTTTTGT AGGTGGAGGA TGTAGTTTCA
  TGGTAGAGCA CTTGCCTAGC ATAGATGAAG CCCTGAGTTG GTCTCTAGCT CCTCCAAAAT
  R
  CACACATGGA ACTTTCCAAT TCTTTGTATC AGGTATCTTA GTGAACTGCT CACTTCCTAG
  ATGGTCCTCT TTCCATATGT TGATGAAAGA GACCAATTTA GAAAAAAACA AAACAAAACA
  AAAACAAAAA CAAAAAAACC ACCTTTTCTA GATCTCTGAA GAAAACCATA TTGTATGACA
  AAAGTAAACC AAACTAGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60437330	NES15944750	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47958123					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437330	NES15944750	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116206175 () rs orientation: forward

Symbol	Name	Function Class
Cdc14a	CDC14 cell division cycle 14A	within coordinates
Rr70202	regulatory region 70202	within coordinates
Rr78756	regulatory region 78756	976 bp distal
Rr78757	regulatory region 78757	1477 bp proximal