rs47958135 SNP Detail

Summary

• ID
  rs47958135
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50322577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATC ACCTGCATTC TATCAGCACC
  R
  ACACAGAGTG CATCAGGAAG CCAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135158464	ENSMUSSNP1891447	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss320757179	CHEV_3_50172050	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47958135					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50322577 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	1698 bp upstream
Tssr33102	transcription start site region 33102	1675 bp upstream
Tssr33103	transcription start site region 33103	1601 bp upstream
Tssr33104	transcription start site region 33104	1587 bp upstream
Tssr33105	transcription start site region 33105	1503 bp upstream
Tssr33106	transcription start site region 33106	1482 bp upstream
Tssr33107	transcription start site region 33107	1457 bp upstream
Tssr33108	transcription start site region 33108	1387 bp upstream
Tssr33109	transcription start site region 33109	1329 bp upstream
Tssr33110	transcription start site region 33110	1262 bp upstream
Tssr33111	transcription start site region 33111	1240 bp upstream
Tssr33112	transcription start site region 33112	1201 bp upstream
Tssr33113	transcription start site region 33113	1157 bp upstream
Tssr33114	transcription start site region 33114	1108 bp upstream
Tssr33115	transcription start site region 33115	1068 bp upstream
Tssr33116	transcription start site region 33116	663 bp upstream
Tssr33117	transcription start site region 33117	438 bp upstream
Tssr33118	transcription start site region 33118	405 bp upstream
Tssr33119	transcription start site region 33119	386 bp upstream
Tssr33120	transcription start site region 33120	153 bp downstream
Tssr33121	transcription start site region 33121	446 bp downstream
Tssr33122	transcription start site region 33122	540 bp downstream
Tssr33123	transcription start site region 33123	1548 bp downstream