rs47958627 SNP Detail

Summary

• ID
  rs47958627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55517825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGGGTGTC CCCAACGGGC GCATGGTGAG TGTGGGCTCT
  GAGCCAGAGC CACAGGGAGG GGGGTGGGCA CACCCAGGGT GGAGTCCAGG AGGCACACCC
  R
  GCAGGGTTGC AGAGGAGCAG GCTGGAGAAG TTGGGTACAG ACAGCTGCTG GCATTGGGAC
  CTGGTGCTGT CACCCTAGGA CCCTTCCAGA TGCCCTGCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss149036059	ENSMUSSNP1106417	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss324345357	CHEV_13_55471373	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs47958627					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55517825 () rs orientation: forward

Symbol	Name	Function Class
Rgs14	regulator of G-protein signaling 14	within coordinates
Rr369713	regulatory region 369713	182 bp downstream
Rr480442	regulatory region 480442	1973 bp distal
Rr480443	regulatory region 480443	1407 bp distal
Rr480444	regulatory region 480444	1187 bp distal
Rr480445	regulatory region 480445	270 bp distal
Rr480446	regulatory region 480446	within coordinates
Rr480447	regulatory region 480447	1335 bp proximal
Tssr119942	transcription start site region 119942	246 bp downstream
Tssr119943	transcription start site region 119943	237 bp downstream
Tssr119944	transcription start site region 119944	199 bp downstream