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rs47958744 SNP Detail
Summary
  • ID
    rs47958744
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr17:14912470 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTCTGTTCTC CTGCAGGCCT
    GTGTTTCCAT TTGCAGGGAT TCTAAGTTGG CTCAGCAGAC CCTGGATCAG AAGTCGGAGG
    CCTGGCCTGA AGCCTGGTTC CTCTGCTCCT CTGTTAACTC CTTAAGGGCT TGCTTCCCCA
    TGCTCAGCTC TCAGCTCCCC CTCCAACAGG CCAGGTTCTG TTCCATGTCA TTCCCTGCTC
    Y
    GTGGAAACTG ATCCGTGCAC TGTAGTCCCT CATCTCTGTA AAGATGGCTA CAATGGGATA
    ACTTCTCATT GAGAAGGACA TCTCAGCAGT TCCCCTCTCC AGAATATTTT TGCTAAGCTG
    GAAACAATGC CCTCCACCAA GGGACAGTTT TCTCCCCAGA GGGAGACAAT GGGGCAAGAA
    CTTGGTCTTG CCCCATGAGC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss60540271 NES16561529 PERLEGEN MM_PANEL2 f SNP C C C C C C T C C C T C C T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs47958744 SNP C C C C C C T C C C T C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60540271 NES16561529 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:14912470 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr522557 regulatory region 522557 42 bp distal
Rr522558 regulatory region 522558 1134 bp proximal
Thbs2 thrombospondin 2 Intron
Tssr146500 transcription start site region 146500 1874 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory