rs47958778 SNP Detail

Summary

• ID
  rs47958778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:88484015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTACATC AACCATATTG
  TTGCCACAAC AGGCCCCTCT GGACAGATGC TCTTCGTGGG GATGCTGTAC CTCCGACATT
  CCGTATGCTG TGTTCCCTAA CAGGACCTGG CCGTGCACAG GCAGCGCCGC CCTCGTTTAC
  ACACACCTCT CCTCTCACCT GCGCTCTGCT GTGTCTCTTC TCTGCTCCAC AGTAAGCATT
  R
  AAGGATCTGC CTGCTGGGCT CTAGAGGGAG GGCTCCCTGT GGGAGCTTTG CAAGGAGGCT
  CTAGAGCTGT CTTGGCAGAC CATGGTGCTG GTCACATGCA TCACCACCAC CTCTTCTGAG
  GAAAGACTCA TGTTCTCTCA ACTAACATCC TGAGTCCTCC CCTGGATAGA CCTTCAGCCC
  AGAACAAGAA GGGGCAGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss63579250	NES17028529	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47958778					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63579250	NES17028529	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:88484015 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7510	CpG island 7510	775 bp proximal
Gm62180	predicted gene, 62180	within coordinates
Tssr132609	transcription start site region 132609	468 bp upstream
Tssr135809	transcription start site region 135809	394 bp downstream
Zdhhc25	zinc finger, DHHC domain containing 25	490 bp upstream