rs47958996 SNP Detail

Summary

• ID
  rs47958996
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84355725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAGGACA GCATTGCCTG
  TTGATGAGCC CAGTTCTTCA TTCTGCTTTT CCTACAGTGC ACTGAACAGC AGAGTAGATG
  GTTTACATCG CAAATACATA GTTACAATGA ACAAAGACCA AACACAGGAG CCCGAAAGAA
  TACCATGCTT CCAGATAGCA AAGGGGAAGA TGTTTCAGAA CAGTGAATGT GGGGTTTAGA
  R
  ATGCAAGCCC TTCTGACTGA TCTCTTTGAG CATCTGTAAG TAGTCTCTGC TAGTTGCCTG
  TAGATTTGGC ATTCCAGTTT GCATTAAAAC ACACATAGCA ATTAAAATGT GATTTTTTTT
  TAAATAAAGG AAGCAACCCC CGTGTTTTGT ACTGTGTTTT AGATTCTGCA TGCATAATTG
  TGATGTCACT GAGTCTGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60500609	NES16526875	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G	G		G	G	G	G		G
ss325260818	CHEV_16_84559082	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47958996					SNP	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500609	NES16526875	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84355725 () rs orientation: forward

Symbol	Name	Function Class
Gm32073	predicted gene, 32073	within coordinates
Rr404934	regulatory region 404934	820 bp upstream
Rr518505	regulatory region 518505	484 bp distal
Rr518506	regulatory region 518506	within coordinates
Rr518507	regulatory region 518507	808 bp proximal
Rr518508	regulatory region 518508	939 bp proximal
Tssr139145	transcription start site region 139145	1669 bp downstream