rs47959443 SNP Detail

Summary

• ID
  rs47959443
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172038720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTA GCTCAGGCTG GCTTTGAACT
  Y
  ACAGTGGTAG TCTAGCCTCT GCCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007456	PARCsnp_1.17806	PARC_SEQ	INBRED	f	SNP		C	T
ss120010366	PARCsnp_1.07450	PARC_SEQ	INBRED	f	SNP		C	T
ss146184018	ENSMUSSNP1592346	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320123254	CHEV_1_174141284	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs47959443					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172038720 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Tssr10179	transcription start site region 10179	808 bp downstream
Tssr15168	transcription start site region 15168	1027 bp upstream
Tssr15169	transcription start site region 15169	949 bp upstream
Tssr15170	transcription start site region 15170	927 bp upstream
Tssr15171	transcription start site region 15171	909 bp upstream
Tssr15172	transcription start site region 15172	828 bp upstream
Tssr15173	transcription start site region 15173	734 bp upstream
Tssr15174	transcription start site region 15174	680 bp upstream
Tssr15175	transcription start site region 15175	830 bp downstream
Tssr15176	transcription start site region 15176	1911 bp downstream
Tssr15177	transcription start site region 15177	1965 bp downstream
Tssr15178	transcription start site region 15178	1989 bp downstream