rs47959662 SNP Detail

Summary

• ID
  rs47959662
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104694357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAATTACCT CCAGGATTAT AACTGTCTGT AGGAGGAGCC
  AATGGGAAGT AGCCATTAAG AGCAGGGGAC TCTTTATTTT TTTTTTTTAA TTTATTTTTA
  K
  TTTCATGTGC ATTGGTGTTT GGCCTGCGCA TGTGTCTGTA TGAGGGTGTT GGAACTGAAA
  CTCCCTGGAA CTGGAGTTAT AGACAGTTGT GTGCTGCCAT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60431865	NES15936357	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	T	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47959662					SNP	G	G	G	G	T	T	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431865	NES15936357	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104694357 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13651	CpG island 13651	1503 bp proximal
Gm66976	predicted gene, 66976	1268 bp downstream
Ppm1j	protein phosphatase 1J	1023 bp downstream
Rhoc	ras homolog family member C	1993 bp upstream
Rr77009	regulatory region 77009	1243 bp proximal
Rr375521	regulatory region 375521	1782 bp downstream
Tssr31056	transcription start site region 31056	1531 bp upstream
Tssr31057	transcription start site region 31057	1752 bp upstream
Tssr31058	transcription start site region 31058	1801 bp upstream
Tssr31059	transcription start site region 31059	1985 bp upstream