rs47960677 SNP Detail

Summary

• ID
  rs47960677
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15075420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACAGAGC TGGGTGGAAG
  CTTCACTGGG GTGGTCACAG ATCATCCAGA GAACATCACG ACCTGTGTCC TCCTCCGTGG
  AGTCCTCTGA CCCAAGGTTT CAGGTTCACA AGCTCCCCTA AGGTTACATC TCTGGAGGCT
  CTTACTACAG TGCACGGGGG GTGTGGGGGG TGGGACATGC CACATGAAAC AGATCTGGAA
  Y
  GAAGGGAACT GAACGTCTCC AAGTTCTGTG ATAAACATCA GTGGCAGAGT GGCTGGAGTT
  GCTGGGTGTG GGTGGGCATG CTTCACCCTA CATACTTCTA TGTTATCTTC TTCACTATAA
  GGAATACCCG ATAAACAAGG GAAGAGTGTT GTTTGGGTCT GCTGCTTAAA AGGGTCATGG
  TCCATTATAT GTGGTAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148695652	ENSMUSSNP2523108	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47960677					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15075420 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20129	CpG island 20129	1828 bp proximal
Gm37844	predicted gene, 37844	within coordinates
Kbtbd11	kelch repeat and BTB (POZ) domain containing 11	within coordinates
Rr660167	regulatory region 660167	1863 bp distal
Rr660168	regulatory region 660168	890 bp proximal
Rr660169	regulatory region 660169	1984 bp proximal
Tssr76486	transcription start site region 76486	1747 bp upstream
Tssr76487	transcription start site region 76487	1766 bp upstream
Tssr76488	transcription start site region 76488	1879 bp upstream
Tssr76489	transcription start site region 76489	1962 bp upstream