rs47960897 SNP Detail

Summary

• ID
  rs47960897
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140542408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATC TCAAAAAAAA AAGTAAGAGG
  Y
  GGGGAAGGCT TGCCGGGGGT AGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147713855	ENSMUSSNP2683743	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47960897					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140542408 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15197	CpG island 15197	164 bp distal
Gm13032	predicted gene 13032	within coordinates
Padi1	peptidyl arginine deiminase, type I	within coordinates
Rr603557	regulatory region 603557	449 bp proximal
Tssr44282	transcription start site region 44282	929 bp upstream