rs47961798 SNP Detail

Summary

• ID
  rs47961798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:29529872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTTTTTGG ATAAATACTA
  TTATTGCTTG GATTATTAAG CCAAAAGTTA TATATCTACC CCCCATACCT TCTCGGAGAC
  CATTTAACTT CTCTTTTGTA ATTTAGCTCC TTTATTTGTT CCCTGTTTAC TATAGACAGA
  AATTACTTCA AAAAACTTTC TAGAAGCAAA TCTTTATCCT CAAAGTCTTC TGTTTATCCA
  Y
  TTGGTGAACA TTAGAGATCA CATTTGGGCC GTGCATCTTC TAGAAACCTT CCCCAGTGTA
  GATAGCATTT AGGTTTTGTC CATTTTTACC TCATACTACA TCAGGTAGAG GCAGTCTGGT
  GGTTTCTGTT ACATCACCTC AAGATAAATA GCCATTACTC TACTAAGTCT ACCAACATGA
  GCTGTCAAAG ATATAGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63009262	NES17433185	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47961798					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63009262	NES17433185	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:29529872 () rs orientation: forward

Symbol	Name	Function Class
4930578E11Rik	RIKEN cDNA 4930578E11 gene	within coordinates