rs47962500 SNP Detail

Summary

• ID
  rs47962500
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115951838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTGAAGG GAAATGGAGA
  GAAGAGAGGC TCTCATAGTC CGAATTAGCC TCAAAGGAAA CACGTGGTCG CTGAGGCTAA
  TCTCTCATGT GCTGAGACTC CAAGTGTGCC CTACCACATA CAATCCCATC ATTTGCTAAT
  TAAGCATTAT TAGAAATGGA AATTACTCTG ATAATTCCAA AGCTTTTGGT TATATAGTCA
  K
  ATTTTTTTAA GTATTTTATT CTCTAATACT GTGATGATAT ATATAAAATA CACACACACA
  CACACACACA CACACACACA CACACATGCA CACACGCACA CATTATTCCA ACAGAAAGCT
  GAGGCAAACG TAATAATGTA ATCAAAGGAA GGGGCCAAGG TCCAACCCCC ATCAAGCAGC
  AGAACCTGGT AACTTTGGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61318579	NES16925656	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47962500					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61318579	NES16925656	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115951838 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2211	CpG island 2211	1528 bp distal
Ptprr	protein tyrosine phosphatase receptor type R	within coordinates
Rr221625	regulatory region 221625	within coordinates
Tssr99341	transcription start site region 99341	2000 bp upstream
Tssr99342	transcription start site region 99342	1992 bp upstream
Tssr99343	transcription start site region 99343	1984 bp upstream
Tssr99344	transcription start site region 99344	1976 bp upstream
Tssr99345	transcription start site region 99345	1670 bp upstream
Tssr99346	transcription start site region 99346	1654 bp upstream
Tssr99347	transcription start site region 99347	1634 bp upstream