rs47963247 SNP Detail

Summary

• ID
  rs47963247
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48040629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAC CTCTCCACTC ACCATGCTTC
  Y
  ATGAAGTGTG TCTAAAGGAT AGGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145708979	ENSMUSSNP6484297	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss325406547	CHEV_17_47866653	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47963247					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48040629 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Rr528106	regulatory region 528106	1005 bp proximal
Tssr5147	transcription start site region 5147	953 bp downstream
Tssr5148	transcription start site region 5148	391 bp upstream
Tssr5149	transcription start site region 5149	1779 bp upstream
Tssr145004	transcription start site region 145004	962 bp downstream
Tssr145005	transcription start site region 145005	941 bp downstream
Tssr145006	transcription start site region 145006	912 bp downstream
Tssr145007	transcription start site region 145007	880 bp downstream
Tssr145008	transcription start site region 145008	859 bp downstream
Tssr145009	transcription start site region 145009	831 bp downstream
Tssr145010	transcription start site region 145010	449 bp downstream
Tssr145011	transcription start site region 145011	430 bp downstream
Tssr145012	transcription start site region 145012	413 bp downstream
Tssr145013	transcription start site region 145013	361 bp downstream
Tssr145014	transcription start site region 145014	376 bp upstream
Tssr145015	transcription start site region 145015	438 bp upstream
Tssr145016	transcription start site region 145016	449 bp upstream
Tssr145017	transcription start site region 145017	894 bp upstream
Tssr145018	transcription start site region 145018	906 bp upstream
Tssr145019	transcription start site region 145019	937 bp upstream
Tssr145020	transcription start site region 145020	958 bp upstream
Tssr145021	transcription start site region 145021	984 bp upstream
Tssr145022	transcription start site region 145022	1016 bp upstream
Tssr145023	transcription start site region 145023	1043 bp upstream
Tssr145024	transcription start site region 145024	1154 bp upstream
Tssr145025	transcription start site region 145025	1498 bp upstream
Tssr145026	transcription start site region 145026	1754 bp upstream
Tssr148459	transcription start site region 148459	903 bp upstream
Tssr148460	transcription start site region 148460	851 bp upstream
Tssr148461	transcription start site region 148461	839 bp upstream
Tssr148462	transcription start site region 148462	796 bp upstream
Tssr148463	transcription start site region 148463	423 bp upstream
Tssr148464	transcription start site region 148464	338 bp upstream
Tssr148465	transcription start site region 148465	417 bp downstream
Tssr148466	transcription start site region 148466	430 bp downstream
Tssr148467	transcription start site region 148467	925 bp downstream
Tssr148468	transcription start site region 148468	956 bp downstream
Tssr148469	transcription start site region 148469	1046 bp downstream