rs47963681 SNP Detail

Summary

• ID
  rs47963681
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:86234451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACACTGT TAGGACTTAA
  AAGCAGAGTA ACAAAAGCAA TATATAAGAT TACTCACCTA GCATTATCTA AGTCCACAGC
  AAATAAGTAA GAGTGTAATT GATGTCCTGA GGAGAAAACC CTACTGTTCT GTTTCCAACA
  ACTTAAAGCT GTCTGTGCTG TTGGGACCCT CACCCGTGCG CACCGTCATC CCTGCCTATG
  Y
  CTGAGCGGTC AGAGAAGAGA ACTGCTCAGC TTCGCAGGGT CCTTCCTCCG ATGCAGCAAC
  ATCAGAAGCC CAGGCACGAA TTCAAGACTG AACACGATTA TTTTAAGGCC AGGCTTACGG
  TTCCTTTTGT CAATAATTTT TAAGAATACA TTTGAGATGT ATCATCTTCC GGCCACACCT
  CATTTATAAA ACAAAACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss60286294	NES15785428	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T		C	T
ss325489976	CHEV_17_86326363	CHEVERUD	SCREENING_POP	f	SNP						C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs47963681					SNP	T	T	C	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60286294	NES15785428	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:86234451 () rs orientation: forward

Symbol	Name	Function Class
Gm30117	predicted gene, 30117	within coordinates
Rr532331	regulatory region 532331	1281 bp proximal
Rr532332	regulatory region 532332	1513 bp proximal
Tssr149724	transcription start site region 149724	1540 bp downstream