rs47964460 SNP Detail

Summary

• ID
  rs47964460
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17462514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCACGCTA ATCATTCATT
  TAGACAACTA CGGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTAAAATCCA TCTATTCACC TTCTATTGAA AGATGTTATA AACTTTCAAG CTAATCAAGA
  TGGCTTTTTA AAGGCCAGGG GCCTTGTAAC CAGTAACACC AGAGTTTCAG AATGAGCCAC
  R
  ACCTTCATGA ATAGCGTGAT ATTTGGAAGG ACCCGCTTGA ATCAAGTTTG CTTGGCTGGA
  ACCCCTGGAC ATAGTATAGA CCCTTGAAGG AGATTTGAGA ACTGGGTTCT AACCCTGGCT
  TTCTTAATAC CAGCTGTGTG AGCTTCCTAG GAATTCGTAC GGGCTGTTTT ATTCATCTGC
  AAAATGATTC CGTGCAGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133014951	ENSMUSSNP6843125	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47964460					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17462514 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	800 bp proximal
Met	met proto-oncogene	1285 bp upstream
Rr626799	regulatory region 626799	795 bp proximal
Rr626800	regulatory region 626800	959 bp proximal
Rr626801	regulatory region 626801	1002 bp proximal
Rr626802	regulatory region 626802	1534 bp proximal
Tssr55050	transcription start site region 55050	917 bp upstream
Tssr55051	transcription start site region 55051	1040 bp upstream
Tssr55052	transcription start site region 55052	1234 bp upstream
Tssr55053	transcription start site region 55053	1311 bp upstream
Tssr55054	transcription start site region 55054	1370 bp upstream
Tssr55055	transcription start site region 55055	1386 bp upstream
Tssr55056	transcription start site region 55056	1412 bp upstream
Tssr55057	transcription start site region 55057	1577 bp upstream
Tssr55058	transcription start site region 55058	1617 bp upstream
Tssr55059	transcription start site region 55059	1656 bp upstream