rs47964578 SNP Detail

Summary

• ID
  rs47964578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:85275604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGTATAGT TGTTAAAATA AAGTTATTAT TAGTTGTGAG
  TGGGTGAAAT CGGACCAGTA GAAAGATTCC TGCAACTACT ATTGTACTTG AGTGTAGTAG
  Y
  GCTGAAACTG GTGTAGGGCC TTCTATTGCT AAAAATATAT ATATTTTAGT TTGAGACAGG
  GGTTTCTCTG TGTAGTCCTG GCTGTCCCAG AACTCACTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52675558	NES15491895	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47964578					SNP	C	T	T	T	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52675558	NES15491895	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:85275604 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5915	CpG island 5915	within coordinates
Gm4076	predicted gene 4076	within coordinates
Rr388812	regulatory region 388812	within coordinates
Rr483357	regulatory region 483357	within coordinates
Tssr4134	transcription start site region 4134	603 bp downstream
Tssr120547	transcription start site region 120547	895 bp downstream
Tssr120548	transcription start site region 120548	783 bp downstream
Tssr120549	transcription start site region 120549	716 bp downstream
Tssr123349	transcription start site region 123349	846 bp upstream
Tssr123350	transcription start site region 123350	475 bp upstream
Tssr123351	transcription start site region 123351	381 bp upstream
Tssr123352	transcription start site region 123352	71 bp upstream