rs47965184 SNP Detail

Summary

• ID
  rs47965184
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30815245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCTGTGCTG CCTGCCCAGT GACCTCTGGA GCCCGGAAAG
  TCCTGATAGG GGGATGGGGG CTCGGCCCTG AAAACGCAGC ACTGGTTGCC CAGGCCCAGG
  Y
  CGCAGCCAAG TAGCCGGAAG CAGCTAGACG CAAGTGCATC CGGTCCCACC AGAAGCCAAG
  GGCCACTAGT GTCAGACCCC AGACCTGAGC CAGATAAAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322139440	CHEV_7_31900839	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47965184					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30815245 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18835	CpG island 18835	115 bp proximal
Hpn	hepsin	530 bp upstream
Scn1b	sodium channel, voltage-gated, type I, beta	704 bp downstream
Tssr71932	transcription start site region 71932	1104 bp upstream
Tssr71933	transcription start site region 71933	512 bp upstream
Tssr71934	transcription start site region 71934	1072 bp downstream