rs47965252 SNP Detail

Summary

• ID
  rs47965252
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131169456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCACTGT GGTAATGATG
  AGGGATTCAA ACTTGTAATC TCCTATTTTC TGGTCTGTTT CAGGTACACG GTGCATATAC
  TATAATATTA CAAATCTATC AGTTGTTAAT TACTGGATTC TATTTAATGC ATGGTTTTAC
  AATTAGCTTG GTCAAAGTTC TATTTTGTTT GCTTAGTTTA TTCTTTGAGA CAGGATGCCC
  Y
  TACATAAGCC CTGGCCTTAA ACTCTCAATC TCCCTACCTC AGCTTCCCAA GTGCTGAGGT
  GTGCACTCTT ACACACGGCT CTAAGTGCAG AATTTGTAAA ACGATTATCT ATCCATCCAT
  GCATCCATCC ATCAATTTTG AGACAGATTC TCCTTATGTT CAGACCTGGC TAGTCTGAAC
  TCAGATATGT AGATGAGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147603044	ENSMUSSNP4863954	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47965252					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131169456 () rs orientation: forward

Symbol	Name	Function Class
Rnf24	ring finger protein 24	within coordinates
Tssr26391	transcription start site region 26391	1446 bp downstream