rs47965369 SNP Detail

Summary

• ID
  rs47965369
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:37298225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTACTG CTGCTAAGAT
  TTTGGAACGA CCATCCACAC TGCCATGCTT AATGGGAACA CACACATGGA ATCACACCAC
  GTAGCTCTAA CTCACACATC CTCTCAGCTC ATCTTGCTTT CCCAGTACAT GAAACGAGAA
  GCAAGGTTGT TGCCGGGTGT GGTGGCACAC ACCTTTAATC CCAGCACTTG AGAGGCAGAG
  R
  CAGGCGGATT TCTGAGTTCC AGGACAGCCA GAGTTACACA GAGAAACCCT GTCTCGCAAA
  ACAAAACAAA ACAAAACAAA ACAAAACAAA CAAACAAAGA AGCAAGGTTG TCTCCATCTT
  ACTGAGTCAG AAACCAAGGC CCCGAGTCCA TATTCACACC CCGGTCAGGC AGAGTGGCAA
  GCCCTGCTTC CTCCCAGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148937641	ENSMUSSNP6172206	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47965369					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37298225 () rs orientation: forward

Symbol	Name	Function Class
Cnga3	cyclic nucleotide gated channel alpha 3	Intron
Gm69908	predicted gene, 69908	1213 bp downstream
Rr409496	regulatory region 409496	490 bp distal