rs47965372 SNP Detail

Summary

• ID
  rs47965372
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4268472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAACTAAA AGCTGTCACT
  TTAGTTTAGT TTGCCAGCTC ATGGATCCAG TGGGGCAGGT GTGCCTTATA AGGCATCTTA
  CCCATAGAGG ATGTTAAACC AAGACCCTGG TCTGTAAGGG ATCTCTGAAG TATATGGGCT
  CATTGAGTTG GCATTTTGGG CTGTACAGCC AATACTCTAG AGATACAGGC AGAAGGCTCC
  Y
  GAGTTCCGGG TCCGCCTGGG CTACTTAAGG TTTATTGACT CATCACAGTG CTAACTAGAT
  AAAAGAAATG AGTCCAGGAA CATCTTCAAA AGTTTCAGAA GGAGGGCTAG CAAGCAGCTG
  GAATGAGGTC TGCTGGACCT AGAATTAAGA GCATTTTCAG GGCTGGCCAT GTAGCTCAGT
  TGGCAGAGTA TTTCTGTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148555705	ENSMUSSNP3676083	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47965372					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4268472 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20046	CpG island 20046	1029 bp distal
Prr36	proline rich 36	1013 bp upstream
Rr658993	regulatory region 658993	670 bp distal
Tssr80256	transcription start site region 80256	1469 bp upstream
Tssr80257	transcription start site region 80257	1429 bp upstream
Tssr80258	transcription start site region 80258	1346 bp upstream
Tssr80259	transcription start site region 80259	1304 bp upstream
Tssr80260	transcription start site region 80260	1220 bp upstream
Tssr80261	transcription start site region 80261	1171 bp upstream
Tssr80262	transcription start site region 80262	969 bp upstream