rs47965727 SNP Detail

Summary

• ID
  rs47965727
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130091217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGGGAGCT GGAGACCAAG
  CTCAGAGCCA CTGGAAGAGC GTGCCTTAAC CACTGAGTCA TCTTCCCATG GCGCCTTTGT
  TTGTTTGTGT TTGGTTTGGT TTGGTTTGGT TTGGTTTGGT TTGGTTTGGT TTGGTTTGGT
  TTGGTTTGGT TTTTCAAGAC AGAGTTTCTC CATGTAGCCC TGGCTGTCCT GGAACTCACT
  C
  TGTAGACCAG GCTGTCCTCA AACTCTGAAA TCTGCCTGCC TCTGCCTCTG GAGTGCTGGA
  ATTAAAGGTA TATGGTACCA CCGCCTGGCT TCTATGGTGG CTTTTAATCA GTGTGGTTTC
  TTGCATTTGT GCTGTATTTA AGCATAAAAC CGATCTGGGG ACTAGGAAGA TGGCTCAGTG
  GATAAAGGCA CTCGCTGCCA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss149134993	ENSMUSSNP5206697	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47965727					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130091217 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14926	CpG island 14926	1549 bp proximal
Rr600477	regulatory region 600477	1401 bp proximal
Rr600478	regulatory region 600478	1656 bp proximal