rs47966359 SNP Detail

Summary

• ID
  rs47966359
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:100657493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGTGCC CTGCACTTGA
  AGGAGTCTGT GTAAACAGCC CAAGCCATGG ATCACTGCAA GCCACCATCT CACCTCTGAC
  CCCTGTCTGC CCCTCAGATC TCCATCCTCC TTCATGAGAA TAACAGACCC ATCTCAGATT
  CTCCAACCAC ATCAGGAGAA CCTGAAACTC CAGCTCTGAA TTTTAATTGC CAATTGATCA
  R
  ATAATGTAGT AATAAAAATT GATCCCAAGG CCAAGCATGG TAGCACACAC TCCAAAAAGT
  TAAAACAAAA CAAATCTCAA GCACATGTTC ACAATCAACT TTTAAATATT TACCATAGAG
  GTGTAAAATT CCTCGTATTT ATCTAGAGAA AGTGAATGTG CATTTTTCAC ATATTTTTAA
  TCAGCCACAT CTCACACTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61948318	NES17113814	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47966359					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61948318	NES17113814	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100657493 () rs orientation: forward

Symbol	Name	Function Class
Gm57598	predicted gene, 57598	1354 bp upstream
Ocln	occludin	Intron
Rr484925	regulatory region 484925	1660 bp distal
Rr484926	regulatory region 484926	808 bp proximal