rs47966826 SNP Detail

Summary

• ID
  rs47966826
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:26087650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAT GAGCTCTCAA ATCCTGGGAC
  Y
  GGCTCGCGTC CTTCACGGCA GCCGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60582827	NES16320617	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47966826					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60582827	NES16320617	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26087650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20188	CpG island 20188	within coordinates
D830025C05Rik	RIKEN cDNA D830025C05 gene	within coordinates
Letm2	leucine zipper-EF-hand containing transmembrane protein 2	52 bp upstream
Rr368506	regulatory region 368506	within coordinates
Rr400804	regulatory region 400804	385 bp downstream
Rr661157	regulatory region 661157	612 bp distal
Rr661158	regulatory region 661158	149 bp distal
Rr661159	regulatory region 661159	within coordinates
Rr661160	regulatory region 661160	693 bp proximal
Tssr76686	transcription start site region 76686	507 bp downstream
Tssr76687	transcription start site region 76687	60 bp upstream
Tssr80717	transcription start site region 80717	596 bp upstream
Tssr80718	transcription start site region 80718	117 bp upstream
Tssr80719	transcription start site region 80719	36 bp upstream
Tssr80720	transcription start site region 80720	20 bp upstream