rs47966959 SNP Detail

Summary

• ID
  rs47966959
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71146581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTTGGCCAC AGACCCTGTA ACCCGGAAGT AGGTCCACAC
  TCCCACTGGG GCTATGTTGG ACTGAAGCAA CCCCTTCCTT ACAGGGAATC CAACATCACT
  Y
  TGGAGACTGG GATTCGGTAA TTTAGTACAT ACTGTGTACT GGGTCCCATA CATCTGGTAG
  GAGGGGACAA GTGTACCTAG CTATGTGTGG CTCAAGGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145129702	ENSMUSSNP5628388	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47966959					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71146581 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20484	CpG island 20484	1635 bp distal
Cpgi20485	CpG island 20485	1491 bp proximal
Gm39191	predicted gene, 39191	1576 bp upstream
Gm64347	predicted gene, 64347	within coordinates
Rr368548	regulatory region 368548	1611 bp upstream
Rr400910	regulatory region 400910	1348 bp upstream
Rr664886	regulatory region 664886	1286 bp distal
Rr664887	regulatory region 664887	within coordinates
Rr664888	regulatory region 664888	1125 bp proximal