rs47967425 SNP Detail

Summary

• ID
  rs47967425
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88817002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT GGGGCTCGTT AGACAGCCAG
  T
  CTTGCCTAAC TGATAAGCTC TAGGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132546930	ENSMUSSNP1155440	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss323782851	CHEV_11_88787490	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47967425					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88817002 () rs orientation: forward

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	within coordinates
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	1900 bp upstream
Tssr110048	transcription start site region 110048	1883 bp upstream
Tssr110049	transcription start site region 110049	1828 bp upstream
Tssr110050	transcription start site region 110050	1617 bp upstream
Tssr110051	transcription start site region 110051	1579 bp upstream
Tssr110052	transcription start site region 110052	1561 bp upstream
Tssr110053	transcription start site region 110053	1533 bp upstream
Tssr110054	transcription start site region 110054	1466 bp upstream