rs47968058 SNP Detail

Summary

• ID
  rs47968058
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29894614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGC GCGGGAGGGT TATGGTTGCA
  W
  GTCTCTGCTT AGCTCATCCG TCCCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148668692	ENSMUSSNP5356452	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
ss322132201	CHEV_7_30980208	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47968058					SNP	A	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29894614 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18782	CpG island 18782	1148 bp distal
Cpgi18783	CpG island 18783	within coordinates
Gm26810	predicted gene, 26810	within coordinates
Rr380605	regulatory region 380605	1448 bp upstream
Rr400232	regulatory region 400232	1284 bp downstream
Rr400233	regulatory region 400233	within coordinates
Tssr65662	transcription start site region 65662	1232 bp downstream
Tssr71701	transcription start site region 71701	1822 bp upstream
Tssr71702	transcription start site region 71702	1370 bp upstream
Tssr71703	transcription start site region 71703	1156 bp upstream
Tssr71704	transcription start site region 71704	1049 bp upstream
Tssr71705	transcription start site region 71705	1027 bp upstream
Tssr71706	transcription start site region 71706	158 bp upstream
Tssr71707	transcription start site region 71707	146 bp upstream
Tssr71708	transcription start site region 71708	99 bp upstream
Tssr71709	transcription start site region 71709	32 bp downstream
Tssr71710	transcription start site region 71710	374 bp downstream