rs47968803 SNP Detail

Summary

• ID
  rs47968803
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:37875339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCTGTA GGGTAGATGG
  TCTGAGCAAG CGACCCAGAA TGGTGTCGCT GCACCCTCTC GCCACTGCTC TAACCCACAT
  GTTATACCCA TGATACCTCC CTTCCCTTCC TAGAGAATCC TACCAGGAGC CCTCCACACA
  CTTGGCTAAT CATGTACTAG TAAGGGGCTC ATCAATGCTC CTTAAGAAAG AGAGACTGAG
  R
  GATCAAAATT CATCCCATCC ATTCCATTAT TAATTTGTTT GATTTAAACT GAAGACAAAT
  TTGAGACTCA CACAAAGAAA CAACCCTTTA ATAGAGACTG TCGCCTGAGG AAGAACTCTC
  TGAGGGGACG TTCTATGTCG GGGAGACCTC TGAGGGAGAG GAGATCTCTG AGGGGGAAGA
  GATGGCTCAG GGGAGGAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61764383	NES17699222	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47968803					SNP	A	A	A	A	A	A	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61764383	NES17699222	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:37875339 () rs orientation: forward

Symbol	Name	Function Class
Rr275856	regulatory region 275856	1061 bp proximal
Rr279067	regulatory region 279067	1550 bp distal
Rr279068	regulatory region 279068	1764 bp proximal
Rr283303	regulatory region 283303	539 bp distal