rs47968911 SNP Detail

Summary

• ID
  rs47968911
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136721142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCT AGTAGAATAG GTAAGCTCTG
  K
  CCAGTAAGAG ATCTTGTCTC AATAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss144517179	ENSMUSSNP4903991	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321700203	CHEV_5_137168158	CHEVERUD	SCREENING_POP	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47968911					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136721142 () rs orientation: forward

Symbol	Name	Function Class
Gm71524	predicted gene, 71524	712 bp downstream
Myl10	myosin, light chain 10, regulatory	858 bp upstream
Rr127468	regulatory region 127468	142 bp distal
Rr127469	regulatory region 127469	659 bp proximal
Tssr49256	transcription start site region 49256	759 bp downstream
Tssr49257	transcription start site region 49257	532 bp upstream
Tssr49258	transcription start site region 49258	668 bp upstream
Tssr49259	transcription start site region 49259	731 bp upstream
Tssr49260	transcription start site region 49260	796 bp upstream
Tssr49261	transcription start site region 49261	1308 bp upstream
Tssr49262	transcription start site region 49262	1326 bp upstream
Tssr49263	transcription start site region 49263	1369 bp upstream
Tssr49264	transcription start site region 49264	1379 bp upstream
Tssr49265	transcription start site region 49265	1833 bp upstream
Tssr49266	transcription start site region 49266	1855 bp upstream
Tssr49267	transcription start site region 49267	1925 bp upstream