rs47969149 SNP Detail

Summary

• ID
  rs47969149
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:100308045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGTAGC TGTCAGAGAC
  TGGCTGCCTA AGTGAGACCT GCGGCTGATG AGTGCCGAGA GCGGAACTTG CCCTTGCTCT
  CCCCAGGACA CAGGGTTCCC TGCATGGACC GCCACTGACC TCCTCCTCAG GAATGGGGAT
  TTTCTCATCA AAGTAGGTGG TGAAGGGCTC CTCAGAGTCT CCAGTGGAAT GTGGGAGGGA
  W
  GAGTTGCTGT AGGCAGGGTT GATGGCGCCA AGGCTGGCAG AGTCTCCATG GTCCCCAGAA
  GCGCCATCTG AGTCAACATA ACAAACCCAC CAAGGAGCTT TCTCAGTGAC GCTGAACTCC
  AGCCCTTCAC CCTGATGGAC ACCTGACCCG CATCTGGTAC TCGCTCCCTC CCCGTCACTG
  ACAACAACCT TAGGCCCAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148475144	ENSMUSSNP5751568	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47969149					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100308045 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr509705	regulatory region 509705			446 bp proximal
Slc11a2	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2			Coding-NonSynonymous
				Coding-Synonymous
				mRNA-UTR
Tssr136419	transcription start site region 136419			within coordinates