rs47969699 SNP Detail

Summary

• ID
  rs47969699
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114954737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATACCGTC TCCACGCTGC
  GAATAAGAAC CCGGATCCCA CACTGGATGG AGGGGCCGCA TAGGTTAGCC TGGGGAAGGC
  CACCCTGCCG GGTCACACAA GAGGTCGCAG CACTGGGATC CAAAAGCAGA GTAAACTTTT
  GTGGGTGCAG GAGGCGTGGC GGGGCGGAGC GAAGTGTACG CAGGCGCAGT GTCCACACGC
  Y
  CGGGGTTGAG CACCACCCAG AAGGTGGAGC ATCCGGCTGC GCATGCGCTC TGAGTCACCG
  GCGCCTCTAG GGGTTGGAGA ACTGGCTTCG CGGTGTGTAG CGGGATGGTT CCTAGGTGCC
  AGGTAAGAGT TGGTTCGCGC GGCTGGGGCG CCCCTTCCTC TCTAACTCCT CCCGGGTTCC
  GGGTCTTGCG CCTGCTGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62050107	NES17145363	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47969699					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62050107	NES17145363	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114954737 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6123	CpG island 6123	within coordinates
Gm34790	predicted gene, 34790	within coordinates
Mocs2	molybdenum cofactor synthesis 2	within coordinates
Rr280966	regulatory region 280966	within coordinates
Rr404003	regulatory region 404003	within coordinates
Tssr121205	transcription start site region 121205	31 bp upstream