rs47969917 SNP Detail

Summary

• ID
  rs47969917
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106104919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTTGAA ATCCTTGGAT
  GCTCTTTGGA ATAAGTACAA GGATAAGTCA ATGATGTAGT CTCTGGTAAA TGTGTAGTCT
  CCCTCACAGG GTTCAGATTT CAGCTCATTT TCTATGATCT TCAAGATTTC ATGAAAGTAA
  TTGTGACTGT AATCACGCTT TTGCTTCCAA ATGTTTTTAA GTGTTTCTGA AAATTTTAAC
  T
  AAATGTTGTT GGTGGTCTTT TTGATGGATT CAACATGACA GGTTTCTGAA CTCTTTCTAT
  GTAAATGGTA TCTTTTTTTC ATTTGAATAT GTTTGTCATA CAAGATTTCA AACTTTTCTC
  TAGACTTTAT TTTTAGTCTT TCCACAATAT TTTTGTCCTT CTTGAAATAC TCCAGAAGGA
  TATTTTCGGA GTCCAAATCA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145614818	ENSMUSSNP5421669	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47969917					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106104919 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr74119	transcription start site region 74119	1741 bp upstream
Tssr74120	transcription start site region 74120	1724 bp upstream
Tssr74121	transcription start site region 74121	1661 bp upstream
Tssr74122	transcription start site region 74122	1644 bp upstream
Tssr74123	transcription start site region 74123	1611 bp upstream
Tssr74124	transcription start site region 74124	1566 bp upstream
Tssr74125	transcription start site region 74125	1555 bp upstream
Tssr74126	transcription start site region 74126	1519 bp upstream
Tssr74127	transcription start site region 74127	1368 bp upstream
Tssr74128	transcription start site region 74128	1288 bp upstream
Tssr74129	transcription start site region 74129	757 bp upstream
Tssr74130	transcription start site region 74130	708 bp upstream
Tssr74131	transcription start site region 74131	497 bp upstream
Tssr74132	transcription start site region 74132	321 bp upstream
Tssr74133	transcription start site region 74133	328 bp downstream
Tssr74134	transcription start site region 74134	555 bp downstream
Tssr74135	transcription start site region 74135	638 bp downstream
Tssr74136	transcription start site region 74136	706 bp downstream
Tssr74137	transcription start site region 74137	772 bp downstream
Tssr74138	transcription start site region 74138	802 bp downstream
Tssr74139	transcription start site region 74139	836 bp downstream
Tssr74140	transcription start site region 74140	891 bp downstream
Tssr74141	transcription start site region 74141	1291 bp downstream
Tssr74142	transcription start site region 74142	1434 bp downstream