rs47969957 SNP Detail

Summary

• ID
  rs47969957
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:157171534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTCACAGG GCAAGTTCCT AAGATTATAC AATAATTTCC
  TAATCACATA CACATAAAAA TAGACAATTA GAGGTCTCAA GATGCCTTGT TCATTTTTAT
  Y
  GATCCTGACC AGATTGGGAA GCCAAAGTGG TAGAATATAT ACAATAATAG CATTATTATT
  TACAAAAGAA TAATAAGGCT ACCTCGTATT GATAAAGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145819231	ENSMUSSNP223964	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47969957					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157171534 () rs orientation: forward

Symbol	Name	Function Class
Rasal2	RAS protein activator like 2	Intron
Rr421371	regulatory region 421371	1294 bp distal
Rr421372	regulatory region 421372	151 bp distal