rs47970817 SNP Detail

Summary

• ID
  rs47970817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99941258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCTGCAT TCTCTCTCTC
  CAGCTGCCTC ACCTTCTCCA TATAGGAGGC CAGGCGGTCA TTCAGGAACT GCATGGTCTC
  CTTCTCATTG CCATTGAAGG AGCCCTCACA GAACCAATTG CAGTTGCCCA CATTGGCGGG
  GATGTTGCAG GCCCCAGGCA GGGTGCAGCC ATGGCAGCTG GGGGGCACAC AGGGCCGGGA
  R
  GAGCAGCTGG TGCGGCAGCT CAGGGCCGGC AGGCAGCAAT TGTATGGCAT GGTGCTGGAG
  GGAGGGAGAG AGGTACCTGG CTGAAGACTC GGTGTGAATT CTCCAAGCCT CAGAGCTCTG
  AGTCTCCTTC CCTTGGTGAG ACTTTATAAG CCTTCTACAG AGGGTGTGGA CACAGTATGT
  AACATCTTTT TTTCTTTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss132717786	ENSMUSSNP6124399	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47970817					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99941258 () rs orientation: forward

Symbol	Name	Function Class
D11Dcr21	DNA Segment, Chr 11, Derry C. Roopenian 21	445 bp proximal
D11Mit123	DNA segment, Chr 11, Massachusetts Institute of Technology 123	291 bp proximal
D11Mit123.3	DNA segment, Chr 11, Massachusetts Institute of Technology 123.3	227 bp proximal
Gm11571	predicted gene 11571	1854 bp upstream
Krt31	keratin 31	within coordinates
Tssr104894	transcription start site region 104894	1672 bp upstream
Tssr104895	transcription start site region 104895	1828 bp upstream
Tssr104896	transcription start site region 104896	1849 bp upstream
Tssr110726	transcription start site region 110726	110 bp downstream