rs47971776 SNP Detail

Summary

• ID
  rs47971776
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:62313280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGG GGCACCAGAG AGAGAAATCT
  R
  GGGCTGCTGT GCAACCCGCC AACCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147265801	ENSMUSSNP3863215	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss325649282	CHEV_18_62339863	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47971776					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:62313280 () rs orientation: forward

Symbol	Name	Function Class
Adrb2	adrenergic receptor, beta 2	250 bp upstream
Cpgi10125	CpG island 10125	within coordinates
Gm9949	predicted gene 9949	within coordinates
Rr393783	regulatory region 393783	within coordinates
Rr539064	regulatory region 539064	1297 bp distal
Rr539065	regulatory region 539065	1186 bp distal
Rr539066	regulatory region 539066	4 bp distal
Rr539067	regulatory region 539067	within coordinates
Tssr151487	transcription start site region 151487	27 bp downstream
Tssr153623	transcription start site region 153623	223 bp upstream