rs47972100 SNP Detail

Summary

• ID
  rs47972100
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:151352298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCACTTA GAATAAGTAT
  AGTCTCTCCA ACAGAATATT TTACTGGAAG AAAGTTCATG ATTGTGAGTA TAAATGATGT
  TTGCTGAGTG ATGTCCACCA GCCCTAAGGA TGCAAAGAAA ATTGAATGAA TTTGTGATAG
  ATATAATATT AATGGGTGAA ATTAACACAA CATGTCAAGT TGACTCTTTC CAACAAGGTA
  S
  CCAGGAGTCA CTGTGAAGAG GGTTAGTGGC TCAGTCTCTG ATTGCTCCCA GAAATCCAGG
  TTAGTTGACT AACCTGGAAG TTCACACCTT CTTGCCTGAC AGAGATGTCA CCAGAAAAAC
  ATTTAACCTT TAGCTTTCCT CCTGCTTCCC AGGATGTTGG TTCTAATCTA AACACACAGA
  CAGGAATCTA GTTAGCACAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60861245	NES15995699	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G	C	C	C	C	G	C	C	C
ss144728553	ENSMUSSNP6306984	ENSEMBL	ENSEMBL_Sanger	f	SNP	C					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47972100					SNP	C	C	C	G	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60861245	NES15995699	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:151352298 () rs orientation: forward

Symbol	Name	Function Class
D730045B01Rik	RIKEN cDNA D730045B01 gene	623 bp upstream
Gm3704	predicted gene 3704	within coordinates
Gm42906	predicted gene 42906	670 bp upstream
Rr117371	regulatory region 117371	1698 bp distal
Rr378823	regulatory region 378823	684 bp upstream
Tssr54686	transcription start site region 54686	671 bp upstream
Tssr54687	transcription start site region 54687	646 bp upstream