rs47972166 SNP Detail

Summary

• ID
  rs47972166
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:46387126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGCTGAG GTTACCCCCC
  CCCCCCGTGT GTCACTGGGA TAATAATGCA AAGGAAACTG ACAGCCAGGA GGGTCTGGGG
  ACCAGCCTGT CCGGGTAGCC AGGAGCCATG CTGGCAAGGC ATCTGTGCAG GGCAGCCTAG
  TTCCTGGCTG ACTAGTGTTT TGAAGATTGC TTCTGAGTGG GTAGTGGCTC TTGCTAACTT
  W
  ATCACCCATT TCAATGGCAC CTCTGTATTA GTTGTGATGA ACTTGTCCCA TGTCATGAGA
  AAAACGGGGC TGACCTTGCC ATACTGTTTG CTCTGATCTT GTTTAAGTGT GAGGGAAAGT
  CCCTGTGCAG AATAGGGGGC ACCTGGTTTT ATGTCACCTA CATGGTCATC AAGACAGAGT
  TGCCTGTTAG AGGTATGGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60312981	NES15818155	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47972166					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312981	NES15818155	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46387126 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11002	CpG island 11002	1262 bp distal
Rr406001	regulatory region 406001	1760 bp downstream
Rr548730	regulatory region 548730	1651 bp distal
Rr548731	regulatory region 548731	1925 bp distal
Rr548732	regulatory region 548732	1817 bp distal
Rr548733	regulatory region 548733	1105 bp distal
Rr548734	regulatory region 548734	1063 bp distal
Rr548735	regulatory region 548735	1310 bp proximal
Sufu	SUFU negative regulator of hedgehog signaling	Intron
Tssr156753	transcription start site region 156753	1688 bp downstream
Tssr156754	transcription start site region 156754	1654 bp downstream