rs47972262 SNP Detail

Summary

• ID
  rs47972262
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:128063273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGATGA ACAAAATGGC
  CGCCACCACC AGCCAGGCAG GAAACGCGGC AGGGCGCAGG CGCGGCCCGC CAGGTCACTG
  CTCAGGCCAG CTGCGACGGC CTGTCCGGCA AAAGTAGCTA AAGAGACAGA AAGCCCGGCC
  AAAGAGTACA CCCTGCGACT GGACACGACG GAGCACGTTG TCGCTGTGGG CCTGCTGGCC
  R
  GTCAAGACCT ATCCGGGTCC AAGAGAGACC CAACACAGAG AGAAAAGCCG CGAAACCAAG
  TCTCCGGGAA TTGCGGTCCC GGGAAAGTGG GGGAAGCCCT TCTCCAGTGG CCTTCTGGGA
  ACTGTAGTTC AAGGCAGACC CTGCGCCTGC CGGAGCGCGA AGGAGAGATT TCTGGGTAGT
  GTAGTCGTAC GTGAGGACGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61060896	NES16065831	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs47972262					SNP	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61060896	NES16065831	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:128063273 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19791	CpG island 19791			within coordinates
Gm32816	predicted gene, 32816			259 bp upstream
Rr368466	regulatory region 368466			48 bp upstream
Rr656040	regulatory region 656040			1346 bp distal
Rr656041	regulatory region 656041			563 bp distal
Rr656042	regulatory region 656042			within coordinates
Rr656043	regulatory region 656043			541 bp proximal
Rr656044	regulatory region 656044			777 bp proximal
Tial1	Tia1 cytotoxic granule-associated RNA binding protein-like 1			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr2414	transcription start site region 2414			354 bp upstream
Tssr69425	transcription start site region 69425			388 bp upstream
Tssr75109	transcription start site region 75109			1823 bp upstream
Tssr75110	transcription start site region 75110			372 bp upstream
Tssr75111	transcription start site region 75111			223 bp upstream
Tssr75112	transcription start site region 75112			162 bp upstream
Tssr75113	transcription start site region 75113			149 bp upstream
Tssr75114	transcription start site region 75114			within coordinates
Tssr75115	transcription start site region 75115			30 bp downstream
Tssr75116	transcription start site region 75116			81 bp downstream