rs47972400 SNP Detail

Summary

• ID
  rs47972400
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:146999151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCATGCA CCTATAATCC
  CAGCCCTAGG AGGCTAAGGC AGAAGGATCT TAAGTGTGAG GCTAGCCTGG GCTATACTGA
  GTCAAGTCAC TATAGGCTAT ATATATAGGA AGACTTTGCC TCAGAAGACC AAGAGAGAGC
  TGTGGATGTC ACCCCTGTGA GGCAGCATCC CTTGAGTTCC CAAGACCACT GGTTTGGATT
  T
  CCAGGACCAG TACCCCATCC CCTAAAATTC AAAGTCATTC CTGTCTGTAT CCATCAAAGA
  CAGTCTCTAC ACGGTTAACA CCTACATGTA ATCAAGAGAT GAATGCGGTT TTGTTTGGTT
  TTGTTTTAAT GAATACCATT TAGTTGCAAT CTGGAAATTA AGAGATTTCC AAGTGAAAAT
  TCAATTGAAT AAGCAGTTTA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144663707	ENSMUSSNP5618010	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47972400					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:146999151 () rs orientation: forward

Symbol	Name	Function Class
Lnx2	ligand of numb-protein X 2	within coordinates
Rr399514	regulatory region 399514	959 bp upstream
Tssr54497	transcription start site region 54497	953 bp downstream