rs47972944 SNP Detail

Summary

• ID
  rs47972944
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:115665542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTGTAAAT CTTATTGTTA ATCTCTGTTC GGTGATGGTA
  GCCTTTCTGC CCAGCTCGAG CCACAGAGAA GGCGATACGG GCATGGTGCC AGGCTCCAAT
  M
  CAGGCAACTT TGCGCAAACC TCGATGGGTC TTTCAGGGCA GTTTCTTTGT ATGCCAACGA
  CTGGTTAACC CTTTGTACCC TTTGCCTTTT GTCACGCCGA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss62053051	NES17142497	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47972944					SNP	A	A	A	A	A	A	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62053051	NES17142497	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:115665542 () rs orientation: forward

Symbol	Name	Function Class
Gm6035	predicted gene 6035	within coordinates
Tssr124162	transcription start site region 124162	787 bp downstream