rs47973550 SNP Detail

Summary

• ID
  rs47973550
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107378287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCCTAAA GCCCCTGTCC
  ACCACCACCC ACCGTGACCA GCAGCACAAA TGGACCCTCC CTGAGACCCA AGAACTACAA
  GTGATAGGTT TTACAGGGAG AGGGGGAGGT GACTCCTAAA GTGTCCACTT GAAGTCCCCC
  CATACTGGGA TTTTGTGGTT ACATGACTGC AACTTGGCAA GAGTTCTCAA AAAAGTTACA
  C
  GGGTTGGGGG CCTGGAATAG GGACTGAATT GTCCCCAGTC CCCTGCTCAT AGGTAGGGAG
  TCTGCTGGGA CTTGGGTGGG GAACAAGGCA GGACAGATCC TCTCTCCTTG GACTGGCCTG
  GGTCTGGTGG CCACCATGGA GGAAGAGACC AGGCCCAGAC AAGTGGGCAG GTTGGGTATT
  GAGGGGAGGC AGGCAGGGTG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135584360	ENSMUSSNP2471868	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47973550					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107378287 () rs orientation: forward

Symbol	Name	Function Class
D3Mit103	DNA segment, Chr 3, Massachusetts Institute of Technology 103	1215 bp distal
Slc6a17	solute carrier family 6 (neurotransmitter transporter), member 17	within coordinates