rs47974069 SNP Detail

Summary

• ID
  rs47974069
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76560767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCGCTGT CCCTTCTCCC
  ACCCACTCAT CCTCTCTCCT GTCCCTCTGA GCTGCAGAGA CATGGGATGG AGCTCTGGAC
  AGCTTCTGGA ATGTGGAGTT AAGGCTCAGC TCTACCTGCA GGTCCAGTCC CCCACCCCCA
  CCCCCACCCC TACCCCCACC CCAGGACCAC AGAGCTACAG GACAGGCCAA GGCAAGCTCA
  Y
  TCTACCTGTC TCTCAGGTTG TCAATGAAGC GCTTAGTGAA GGACTTCACC TTGTCCACCA
  AGGCCCCATA AGGTTTCAGC CTCAAGGCCA CACTCTCCGA GGTGTCGAGC ACGAAGAATA
  GATCCACAGG GCAGTCTGAG CCAGAGAAGA TCCCATGAGC CATGCTCTGA GCCCCACTGG
  GGGCACAAGG CCCCATTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61288898	NES16903815	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47974069					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61288898	NES16903815	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76560767 () rs orientation: forward

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	within coordinates
Cpgi1751	CpG island 1751	1307 bp distal
Gm48276	predicted gene, 48276	1650 bp downstream
Tssr3254	transcription start site region 3254	1008 bp downstream
Tssr3255	transcription start site region 3255	1265 bp downstream
Tssr3256	transcription start site region 3256	1314 bp downstream
Tssr94201	transcription start site region 94201	1421 bp downstream
Tssr98205	transcription start site region 98205	1494 bp upstream
Tssr98206	transcription start site region 98206	1416 bp upstream
Tssr98207	transcription start site region 98207	1045 bp downstream