rs47974437 SNP Detail

Summary

• ID
  rs47974437
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25792344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGGTATT TAATAACACA
  GGAATCTACA GATCTTTAAA AACGTGAGTG GAAGCTATTG AAACTGCCTC TCTGTTTTAC
  CTTGTGGGAC ATCGGACCTT GTCCAGGTGT GGACCAGTTC CTCCTTCTCT CTCTTTTTTC
  TTCCTGCCCC CACCTGCCTC CTTGGCTGCT GCTAGTTTTA CCCAGGTCTA AATGACTTTT
  Y
  CCTACGCCTG GGCTTCCCCA TCGTCACGTG GGCTTTGCAG TTCTAGAGTG AAGATATCAT
  TGCCTGAACT CTGTTCAGGT GCCCATTCCT GGACCAGTCT TGGAGCCTGG GAAAAGTAAT
  GGAGTGGGCC TGTGAACCTG AGGTTGGCTT GTGTGCCCTC AGCCTTGGCC TGCTTCTCCC
  TCTTCCCCTG CATCCAGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60552831	NES16573301	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47974437					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60552831	NES16573301	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25792344 () rs orientation: forward

Symbol	Name	Function Class
Cerox1	cytoplasmic endogenous regulator of oxidative phosphorylation 1	within coordinates
Cpgi8771	CpG island 8771	1758 bp distal
Rr339366	regulatory region 339366	1143 bp distal
Tg(CD3E)26Cpt	transgene insertion 26, Cox Terhorst	within coordinates
Tssr143167	transcription start site region 143167	1050 bp upstream