rs47974641 SNP Detail

Summary

• ID
  rs47974641
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119668544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCAATTC TATGTAAGCA
  ATCCACTGAT CATTTCTTAT GAAAGACCAT CACTTCTAAA ATGAGAATGT TCCTGAGCGA
  AGAGGCTGAA TAACGTGCTG AAGCCACAGA GCCGGTGAGC GCATGAGGTC TGGGCTCTTT
  TACTGCTGGG ATATGCTGTT CTGTGTCACT GAAACCAGAC ACACATCATC AGCCTCATAT
  W
  CATTAATAAT CACAAAGTAC ATCCTGAGCA AAGTCTTACA AACAAGAGAC ACCACAGCCA
  GGATGATTAG AACTGACCCA GCATATGGAG AGTAGGAGTC CAAAACAGAA TGAAGACTGA
  CTATGTGACG GGTAATCTTG GTCAACCTGA CTCCACCTAC AGTCACTAAA ACCCAAGCAG
  CTGAGCACAC CTTAAGTCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60934189	NES16201080	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47974641					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60934189	NES16201080	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119668544 () rs orientation: forward

Symbol	Name	Function Class
Erc1	ELKS/RAB6-interacting/CAST family member 1	within coordinates
Tssr58512	transcription start site region 58512	1383 bp downstream